| Protein ZmGRAS40 | |
|---|---|
|
ZmGRAS40 is a protein in the GRAS family.
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| Information | |
| TF Name: | ZmGRAS40 |
| Species: | Maize |
| TF Family: | GRAS |
| Gene Name(Synonym): | GRAS40 |
| Uniprot ID: | A0A1D6PDQ1 |
| Subgenome: | 1 |
Protein ZmGRAS40
ZmGRAS40 is a protein in the GRAS family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF03514 | |
| Zm00001eb062760_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d034664 | DAPseq |  |
sequence | fimo | position |
| Zm00001d034664 | DAPseq |  |
sequence | fimo | position |
| Zm00001d034664 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d034664 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmGRAS40 is the regulator
Interactions where ZmGRAS40 is the target
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Zm00001eb062760_T001 from maize genome v5
Amino Acid Sequence
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MVREGLVGAAHKGQKNPRDEDMEMEGRKSKQSALCDEETVREMFDKVLLCTDKNCEFHSPMPADAQISGGYVKGSRNKRG
RRKGRSGSGAEEEPVDLTTLLIHCAQAAAIDDHRNSSELLKQIRKHSSATGDAGQRLAHYFADGLEARLAGSGSSIYRSL
AAKRTSTGDILKAFSLYVKACPFRILSHYVANTTILNATKSATRLHIIDYGIMYGFQWPVLMQRLSKRPGGPPYLRITGI
DFPLSGFRPAERVEATGRRLHEYARMFNVPFEYQAIAAKWDTIQVKDLNMKSDEFVVVNCLYRMRNMMDETVTDDSPRTR
VLNTIRKLNPHLFVHGIVNGTYNAPFFVTRFKEAMFFFSSIFDMLEANALRMDEHRLLIEREFFGREAVNVIACEGTERI
ERPETYKQWQMRNLRAGFRQLALDREIMKRARYKVSKSYQGDFLVDEDNKWMLQGWKGRIIYALSAWTS
MVREGLVGAAHKGQKNPRDEDMEMEGRKSKQSALCDEETVREMFDKVLLCTDKNCEFHSPMPADAQISGGYVKGSRNKRG
RRKGRSGSGAEEEPVDLTTLLIHCAQAAAIDDHRNSSELLKQIRKHSSATGDAGQRLAHYFADGLEARLAGSGSSIYRSL
AAKRTSTGDILKAFSLYVKACPFRILSHYVANTTILNATKSATRLHIIDYGIMYGFQWPVLMQRLSKRPGGPPYLRITGI
DFPLSGFRPAERVEATGRRLHEYARMFNVPFEYQAIAAKWDTIQVKDLNMKSDEFVVVNCLYRMRNMMDETVTDDSPRTR
VLNTIRKLNPHLFVHGIVNGTYNAPFFVTRFKEAMFFFSSIFDMLEANALRMDEHRLLIEREFFGREAVNVIACEGTERI
ERPETYKQWQMRNLRAGFRQLALDREIMKRARYKVSKSYQGDFLVDEDNKWMLQGWKGRIIYALSAWTS
MVREGLVGAAHKGQKNPRDEDMEMEGRKSKQSALCDEETVREMFDKVLLCTDKNCEFHSPMPADAQISGGYVKGSRNKRG
RRKGRSGSGAEEEPVDLTTLLIHCAQAAAIDDHRNSSELLKQIRKHSSATGDAGQRLAHYFADGLEARLAGSGSSIYRSL
AAKRTSTGDILKAFSLYVKACPFRILSHYVANTTILNATKSATRLHIIDYGIMYGFQWPVLMQRLSKRPGGPPYLRITGI
DFPLSGFRPAERVEATGRRLHEYARMFNVPFEYQAIAAKWDTIQVKDLNMKSDEFVVVNCLYRMRNMMDETVTDDSPRTR
VLNTIRKLNPHLFVHGIVNGTYNAPFFVTRFKEAMFFFSSIFDMLEANALRMDEHRLLIEREFFGREAVNVIACEGTERI
ERPETYKQWQMRNLRAGFRQLALDREIMKRARYKVSKSYQGDFLVDEDNKWMLQGWKGRIIYALSAWTS
MVREGLVGAAHKGQKNPRDEDMEMEGRKSKQSALCDEETVREMFDKVLLCTDKNCEFHSPMPADAQISGGYVKGSRNKRG
RRKGRSGSGAEEEPVDLTTLLIHCAQAAAIDDHRNSSELLKQIRKHSSATGDAGQRLAHYFADGLEARLAGSGSSIYRSL
AAKRTSTGDILKAFSLYVKACPFRILSHYVANTTILNATKSATRLHIIDYGIMYGFQWPVLMQRLSKRPGGPPYLRITGI
DFPLSGFRPAERVEATGRRLHEYARMFNVPFEYQAIAAKWDTIQVKDLNMKSDEFVVVNCLYRMRNMMDETVTDDSPRTR
VLNTIRKLNPHLFVHGIVNGTYNAPFFVTRFKEAMFFFSSIFDMLEANALRMDEHRLLIEREFFGREAVNVIACEGTERI
ERPETYKQWQMRNLRAGFRQLALDREIMKRARYKVSKSYQGDFLVDEDNKWMLQGWKGRIIYALSAWTS
MVREGLVGAAHKGQKNPRDEDMEMEGRKSKQSALCDEETVREMFDKVLLCTDKNCEFHSPMPADAQISGGYVKGSRNKRG
RRKGRSGSGAEEEPVDLTTLLIHCAQAAAIDDHRNSSELLKQIRKHSSATGDAGQRLAHYFADGLEARLAGSGSSIYRSL
AAKRTSTGDILKAFSLYVKACPFRILSHYVANTTILNATKSATRLHIIDYGIMYGFQWPVLMQRLSKRPGGPPYLRITGI
DFPLSGFRPAERVEATGRRLHEYARMFNVPFEYQAIAAKWDTIQVKDLNMKSDEFVVVNCLYRMRNMMDETVTDDSPRTR
VLNTIRKLNPHLFVHGIVNGTYNAPFFVTRFKEAMFFFSSIFDMLEANALRMDEHRLLIEREFFGREAVNVIACEGTERI
ERPETYKQWQMRNLRAGFRQLALDREIMKRARYKVSKSYQGDFLVDEDNKWMLQGWKGRIIYALSAWTS
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF03514 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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CAGCTCTCGTGCGCAGAAAATCCCG...
CAGCTCTCGTGCGCAGAAAATCCCGCGCCGTTCCCCACGCGTCACCGTGGTGCGCCGCCCCCTTCCTCTCCCGCTCCCCTCCACCTCGACTACCAAAACACTGATCCGGTCGCTGATTCGCTGGTGCTGCTGCAGTTTAGGCTAAACAAATCACCCAGTTGACGAAGAGGGAGCTGCTGCCGCGGTCCTGGCCCAGCTCGAGAGAAGTCTTTTGGTCTTGGCCTCTTGCTGCCGCTGCCCCCCAATCGGCGCCGCTTTGCTTCCTGGTTTCCGCAAGGTTCCACACATCAGCATCCGAGACTTGGGATGGAAGGCACGGCGTCTTCTTGGAGCCGCGACTAGGGTGGGAAGGAAAGTTACTTGCTGCCGTCTTCGCGGTCTTTGCGCAGGCAGGGTAGAGCCGGAGATCAGAGATCTTGATGCAGACAAGTCCTTCGGCGTGCAGGGAAGCGGAAGGTTTCGCGATGTGGTCACAAGTAGTCTGCCTCGTGAAATGGTGCGGGAGGGTTTAGTTGGTGCTGCTCATAAGGGTCAGAAGAACCCGCGTGACGAGGACATGGAGATGGAGGGGAGGAAGAGCAAACAGTCGGCACTGTGTGACGAAGAGACTGTCCGGGAGATGTTTGACAAGGTGCTGTTGTGTACCGACAAGAACTGTGAGTTCCACTCACCAATGCCAGCCGATGCACAGATCAGCGGGGGATATGTGAAAGGATCTAGAAATAAGCGAGGGCGAAGGAAGGGGAGATCAGGTTCTGGTGCAGAGGAGGAGCCAGTTGATCTCACAACCCTACTCATACATTGTGCTCAGGCCGCGGCTATCGACGACCACAGGAACTCAAGCGAGCTGCTGAAACAGATCAGGAAGCATTCCTCTGCTACTGGAGATGCTGGCCAGAGATTGGCACACTACTTCGCCGATGGGCTGGAGGCTCGCCTAGCTGGCTCTGGCAGCAGCATCTACCGTTCGCTTGCTGCAAAGAGAACTTCCACTGGTGATATACTGAAGGCGTTCAGTTTGTATGTCAAAGCATGTCCGTTTAGGATACTATCACACTATGTCGCAAACACGACCATCTTAAACGCTACGAAGAGCGCCACAAGGCTGCACATCATAGACTACGGGATAATGTATGGTTTCCAGTGGCCAGTCCTCATGCAGCGGCTCTCAAAGAGACCTGGTGGCCCCCCGTACCTTCGGATCACTGGTATAGACTTTCCCCTGTCAGGATTCCGCCCTGCAGAGCGTGTTGAGGCGACAGGGCGGCGGTTGCATGAGTATGCCCGTATGTTCAATGTCCCATTTGAATACCAAGCCATTGCTGCCAAGTGGGATACTATCCAAGTTAAAGATCTCAACATGAAGAGCGATGAGTTCGTCGTCGTTAACTGCCTCTACCGGATGAGGAACATGATGGACGAGACGGTGACGGATGACAGCCCGAGAACGCGGGTTTTGAACACAATCAGAAAGCTGAATCCCCATCTGTTCGTTCATGGGATCGTCAATGGTACTTACAATGCACCCTTCTTCGTGACGCGGTTTAAGGAGGCTATGTTCTTCTTCTCTTCGATCTTTGATATGCTCGAAGCGAATGCCTTACGGATGGATGAGCATAGGCTGCTGATAGAGAGAGAGTTCTTTGGCCGGGAAGCTGTCAATGTGATTGCCTGTGAGGGCACAGAGAGGATTGAAAGGCCAGAGACCTACAAACAATGGCAGATGAGAAACCTCAGGGCAGGCTTCCGGCAGTTAGCTCTGGACAGGGAGATAATGAAGAGAGCAAGGTACAAGGTAAGCAAGAGCTATCAGGGGGATTTCCTCGTGGACGAAGATAACAAGTGGATGCTACAAGGTTGGAAGGGTCGTATCATATATGCACTTTCAGCATGGACTAGCTAGACTTGTAAATATTAGTGAGCTACTGAGCTGCTTAGCTGACCTCTTCCATTAATTTCTTGATTAATCACCATTTCATTTTGCTGTATTATGTTTACGTTGTTGAATCTAGCCCTCTTTTAGAAACCAAAGTTTTGTATGTTTGAATTGGCTGCAATAATAGAATCTTGTCCG
GRMZM2G368909_T01 from maize genome v3
Amino Acid Sequence
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MIMDPRPRDDPNLGARLPTPNPPAPHMISFSLQQPQLQFFPSYGFHGHSHSSPVSSHPSPPSAMPGCTTPSPASTTTTEP
DSVEDFSETVADDAVLAYINQFLLEDEDEESYPITSAPVEDSALLAAVEKPFVDILESAKPIAAQGYEVKSWITDDCDST
GSGRFRDVVTSSLPREMVREGLVGAAHKGQKNPRDEDMEMEGRKSKQSALCDEETVREMFDKVLLCTDKNCEFHSPMPAD
AQISGGYVKGSRNKRGRRKGRSGSGAEEEPVDLTTLLIHCAQAAAIDDHRNSSELLKQIRKHSSATGDAGQRLAHYFADG
LEARLAGSGSSIYRSLAAKRTSTGDILKAFSLYVKACPFRILSHYVANTTILNATKSATRLHIIDYGIMYGFQWPVLMQR
LSKRPGGPPYLRITGIDFPLSGFRPAERVEATGRRLHEYARMFNVPFEYQAIAAKWDTIQVKDLNMKSDEFVVVNCLYRM
RNMMDETVTDDSPRTRVLNTIRKLNPHLFVHGIVNGTYNAPFFVTRFKEAMFFFSSIFDMLEANALRMDEHRLLIEREFF
GREAVNVIACEGTERIERPETYKQWQMRNLRAGFRQLALDREIMKRARYKVSKSYQGDFLVDEDNKWMLQGWKGRIIYAL
SAWTS
Nucleotide Sequence
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GTCGGCGAAGTCCTTCGGCGTTCCG...
GTCGGCGAAGTCCTTCGGCGTTCCGATCATCAACTTTTCTTCCAATTTGTAGTTCTCTCTAAGCGGAATCCTTGTGTTCTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTCAGAAAGGTAGCGCAGAGGTGAGATTTGTAACCTGTAATAAGTGACTTGTGGCGCTGAAGATCGAAAGTCAGAGAAATCTTGTGGATACAAGCTCCACCTCCAAGGAATGATAATGGACCCTCGTCCTCGTGACGATCCCAACCTCGGTGCTCGATTGCCCACCCCAAATCCACCCGCACCTCACATGATTAGCTTCTCCCTCCAGCAGCCACAGCTTCAGTTCTTCCCTTCGTATGGATTCCACGGCCACAGCCACAGCTCTCCTGTCAGCTCGCATCCATCTCCACCCTCGGCCATGCCTGGCTGCACCACGCCAAGCCCGGCATCGACAACCACAACCGAGCCAGACAGCGTCGAGGATTTTTCCGAGACTGTTGCTGACGACGCGGTCCTAGCATACATCAACCAGTTCCTTCTTGAAGACGAGGACGAGGAATCCTATCCTATTACCAGCGCGCCTGTGGAGGATTCAGCACTCCTCGCCGCCGTCGAGAAACCATTCGTCGACATCCTCGAGTCTGCCAAGCCTATCGCAGCACAGGGCTATGAAGTAAAGTCTTGGATCACTGATGACTGTGATTCTACAGGAAGCGGAAGGTTTCGCGATGTGGTCACAAGTAGTCTGCCTCGTGAAATGGTGCGGGAGGGTTTAGTTGGTGCTGCTCATAAGGGTCAGAAGAACCCGCGTGACGAGGACATGGAGATGGAGGGGAGGAAGAGCAAACAGTCGGCACTGTGTGACGAAGAGACTGTCCGGGAGATGTTTGACAAGGTGCTGTTGTGTACCGACAAGAACTGTGAGTTCCACTCACCAATGCCAGCCGATGCACAGATCAGCGGGGGATATGTGAAAGGATCTAGAAATAAGCGAGGGCGAAGGAAGGGGAGATCAGGTTCTGGTGCAGAGGAGGAGCCAGTTGATCTCACAACCCTACTCATACATTGTGCTCAGGCCGCGGCTATCGACGACCACAGGAACTCAAGCGAGCTGCTGAAACAGATCAGGAAGCATTCCTCTGCTACTGGAGATGCTGGCCAGAGATTGGCACACTACTTCGCCGATGGGCTGGAGGCTCGCCTAGCTGGCTCTGGCAGCAGCATCTACCGTTCGCTTGCTGCAAAGAGAACTTCCACTGGTGATATACTGAAGGCGTTCAGTTTGTATGTCAAAGCATGTCCGTTTAGGATACTATCACACTATGTCGCAAACACGACCATCTTAAACGCTACGAAGAGCGCCACAAGGCTGCACATCATAGACTACGGGATAATGTATGGTTTCCAGTGGCCAGTCCTCATGCAGCGGCTCTCAAAGAGACCTGGTGGCCCCCCGTACCTTCGGATCACTGGTATAGACTTTCCCCTGTCAGGATTCCGCCCTGCAGAGCGTGTTGAGGCGACAGGGCGGCGGTTGCATGAGTATGCCCGTATGTTCAATGTCCCATTTGAATACCAAGCCATTGCTGCCAAGTGGGATACTATCCAAGTTAAAGATCTCAACATGAAGAGCGATGAGTTCGTCGTCGTTAACTGCCTCTACCGGATGAGGAACATGATGGACGAGACGGTGACGGATGACAGCCCGAGAACGCGGGTTTTGAACACAATCAGAAAGCTGAATCCCCATCTGTTCGTTCATGGGATCGTCAATGGTACTTACAATGCACCCTTCTTCGTGACGCGGTTTAAGGAGGCTATGTTCTTCTTCTCTTCGATCTTTGATATGCTCGAAGCGAATGCCTTACGGATGGATGAGCATAGGCTGCTGATAGAGAGAGAGTTCTTTGGCCGGGAAGCTGTCAATGTGATTGCCTGTGAGGGCACAGAGAGGATTGAAAGGCCAGAGACCTACAAACAATGGCAGATGAGAAACCTCAGGGCAGGCTTCCGGCAGTTAGCTCTGGACAGGGAGATAATGAAGAGAGCAAGGTACAAGGTAAGCAAGAGCTATCAGGGGGATTTCCTCGTGGACGAAGATAACAAGTGGATGCTACAAGGTTGGAAGGGTCGTATCATATATGCACTTTCAGCATGGACTAGCTAGACTTGTAAATATTAGTGAGCTACTGAGCTGCTTAGCTGACCTCTTCCATTAATTTCTTGATTAATCACCATTTCATTTTGCTGTATTATGTTTACGTTGTTGAATCTAGCCCTCTTTTAGAAACCAAAGTTTTGTATGTTTGAATTGGCTGCAATAATAGAATCTTGTCCGTGTCTGCCTGACATATTTGTGTTAATAGTGTAAGAGGTGTTTCTCTATCTTTGTTCCTGTCTTTGGAAAGAAGA
Zm00001d034664_T001 from maize genome v4
Amino Acid Sequence
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MISFSLQQPQLQFFPSYGFHGHSHSSPVSSHPSPPSAMPGCTTPSPASTTTTEPDSVEDFSETVADDAVLAYINQFLLED
EDEESYPITSAPVEDSALLAAVEKPFVDILESAKPIAAQGYEVKSWITDDCDSTGSGRFRDVVTSSLPREMVREGLVGAA
HKGQKNPRDEDMEMEGRKSKQSALCDEETVREMFDKAAAIDDHRNSSELLKQIRKHSSATGDAGQRLAHYFADGLEARLA
GSGSSIYRSLAAKRTSTGDILKAFSLYVKACPFRILSHYVANTTILNATKSATRLHIIDYGIMYGFQWPVLMQRLSKRPG
GPPYLRITGIDFPLSGFRPAERVEATGRRLHEYARMFNVPFEYQAIAAKWDTIQVKDLNMKSDEFVVVNCLYRMRNMMDE
TVTDDSPRTRVLNTIRKLNPHLFVHGIVNGTYNAPFFVTRFKEAMFFFSSIFDMLEANALRMDEHRLLIEREFFGREAVN
VIACEGTERIERPETYKQWQMRNLRAGFRQLALDREIMKRARYKVSKSYQGDFLVDEDNKWMLQGWKGRIIYALSAWTS
Nucleotide Sequence
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ATGATTAGCTTCTCCCTCCAGCAGC...
ATGATTAGCTTCTCCCTCCAGCAGCCACAGCTTCAGTTCTTCCCTTCGTATGGATTCCACGGCCACAGCCACAGCTCTCCTGTCAGCTCGCATCCATCTCCACCCTCGGCCATGCCTGGCTGCACCACGCCAAGCCCGGCATCGACAACCACAACCGAGCCAGACAGCGTCGAGGATTTTTCCGAGACTGTTGCTGACGACGCGGTCCTAGCATACATCAACCAGTTCCTTCTTGAAGACGAGGACGAGGAATCCTATCCTATTACCAGCGCGCCTGTGGAGGATTCAGCACTCCTCGCCGCCGTCGAGAAACCATTCGTCGACATCCTCGAGTCTGCCAAGCCTATCGCAGCACAGGGCTATGAAGTAAAGTCTTGGATCACTGATGACTGTGATTCTACAGGAAGCGGAAGGTTTCGCGATGTGGTCACAAGTAGTCTGCCTCGTGAAATGGTGCGGGAGGGTTTAGTTGGTGCTGCTCATAAGGGTCAGAAGAACCCGCGTGACGAGGACATGGAGATGGAGGGGAGGAAGAGCAAACAGTCGGCACTGTGTGACGAAGAGACTGTCCGGGAGATGTTTGACAAGGCCGCGGCTATCGACGACCACAGGAACTCAAGCGAGCTGCTGAAACAGATCAGGAAGCATTCCTCTGCTACTGGAGATGCTGGCCAGAGATTGGCACACTACTTCGCCGATGGGCTGGAGGCTCGCCTAGCTGGCTCTGGCAGCAGCATCTACCGTTCGCTTGCTGCAAAGAGAACTTCCACTGGTGATATACTGAAGGCGTTCAGTTTGTATGTCAAAGCATGTCCGTTTAGGATACTATCACACTATGTCGCAAACACGACCATCTTAAACGCTACGAAGAGCGCCACAAGGCTGCACATCATAGACTACGGGATAATGTATGGTTTCCAGTGGCCAGTCCTCATGCAGCGGCTCTCAAAGAGACCTGGTGGCCCCCCGTACCTTCGGATCACTGGTATAGACTTTCCCCTGTCAGGATTCCGCCCTGCAGAGCGTGTTGAGGCGACAGGGCGGCGGTTGCATGAGTATGCCCGTATGTTCAATGTCCCATTTGAATACCAAGCCATTGCTGCCAAGTGGGATACTATCCAAGTTAAAGATCTCAACATGAAGAGCGATGAGTTCGTCGTCGTTAACTGCCTCTACCGGATGAGGAACATGATGGACGAGACGGTGACGGATGACAGCCCGAGAACGCGGGTTTTGAACACAATCAGAAAGCTGAATCCCCATCTGTTCGTTCATGGGATCGTCAATGGTACTTACAATGCACCCTTCTTCGTGACGCGGTTTAAGGAGGCTATGTTCTTCTTCTCTTCGATCTTTGATATGCTCGAAGCGAATGCCTTACGGATGGATGAGCATAGGCTGCTGATAGAGAGAGAGTTCTTTGGCCGGGAAGCTGTCAATGTGATTGCCTGTGAGGGCACAGAGAGGATTGAAAGGCCAGAGACCTACAAACAATGGCAGATGAGAAACCTCAGGGCAGGCTTCCGGCAGTTAGCTCTGGACAGGGAGATAATGAAGAGAGCAAGGTACAAGGTAAGCAAGAGCTATCAGGGGGATTTCCTCGTGGACGAAGATAACAAGTGGATGCTACAAGGTTGGAAGGGTCGTATCATATATGCACTTTCAGCATGGACTAGCTAG
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